Quantitative trait loci (QTLs) for stress resistance    (updated May 24, 2017)

 

o   Data classification and details in Tables are not absolutely strict because of space limitation. Always check the specific report.

o   For online abstract/paper click on I.D. number

o   Beyond the menu, use browser search function (ctrl f) to locate items and data in Tables

o   In each stress Table entries are generally sorted by plant species and mode of resistance.

 

 

Select the Stress:

                                                                  

o   Specific root and shoot responses under drought (see also 'whole plant' below)

o   Osmotic adjustment (OA)

o   Whole plant and crop drought resistance

o   Hormonal responses under drought

o   Water-use and photosynthetic activity under drought

o   Flooding/waterlogging/submergence tolerance

o   Salinity tolerance

o   Cold tolerance

o   Heat tolerance

o   Stay-green (non-senescence)

o   Mineral deficiency tolerance

o   Mineral toxicity resistance

 

Specific root and shoot responses under drought (see also 'whole plant' below)      Back to Top

Trait                     

Species        

 Population        

Type * 

QTL#       

Reference     

I.D. **

Rosette growth

Arabidopsis

Ler x An-1

RIL

2

Tisné et al., 2010

10703

Chloroplast function under drought

Barley

Arta’ x Hordeum spontaneum 41-1

RIL

2

Guo et al. 2008

9399

Juvenile stage Drought resistance

Barley

Wild Barley Introgression lines

52 lines

3 recommended as effective

Honsdorf et al. 2014

13491

Root size

Barley

Derkado x B83-12/21/5

DHL

Many

Chloupek et al. 2006

8262

Stem reserve utilization and grain development & yield under terminal stress

Barley

Brenda x H. vulgare ssp. spontaneum

DHL

7 ‘hot spots’

Kalladan et al, 2013

12604

Various plant growth and morphological traits

Barley

Wild barley introgression lines

47 lines

44

March et al., 2014

13228

Various regulatory candidate genes

Barley

Several

13

Tondelli et al. 2006

8189

Biomass, seed fill. NDVI greenness, etc under terminal stress

Bean

‘Buster’ × ‘Roza’ [BR]

RIL

2 major

Trapp et al., 2016

14658

Root size

Bean

BAT 477 x DOR 364

RIL

15

Asfaw and Blair, 2012

12235

Drought resistance

Brassica napus

(No2127-17 × 275B F4) x (Huyou15 × 5900 F4)

DH

19

Li et al., 2014

13248

Physiological responses to water regimes

Brassica rapa

Yellow Sarson x Caixin type (L58)

RIL

Many

El-Soda et al., 2014

13049

Drought resistance by many traits over locations

Chickpea

Two populations

RIL

Many

Varshney et al., 2014

13083

Seedling performance under PEG stress

Cotton

Dandara x Giza-70

RIL

14

Abdelraheem et al., 2015

14193

Various physiological traits

cotton

G.hirsutum x G.barbadense

33

Saranga et al. 2004

7016

Seedling resistance

Cowpea

T93K503-1 x CB46

RIL

7

Muchero et al. 2010

10252

RWC, canopy temperature, CMS, chlorophyll, OA, etc

Creeping bentgrass

7418–3 x L-93

 

Many, some overlapping

Merewitz et al., 2014

13397

Root and shoot traits under drought stress

Lentil

ILL6002 x ILL5888

RIL

18

Idrissi et al., 2016

14628

Root architecture and water acquisition

Lettuce

Salians X UC92G489

F2

13

Johnson et al. 2000

5041

Leaf elongation rate in correspondence with ASI

Maize

Ac7643 and Ac7729/TZSR

RIL

5

Welcker et al., 2007

8701

Leaf elongation under stress in several populations

Maize

Several

19

Welcker et al., 2011

11322

Leaf temperature and seedling DM under drought stress

Maize

Zong3 x 87-1

RIL

9

Liu et al., 2011

10815

Roots traits and yield

Maize

Lo964 x Lo1016

F3

 <11

Tuberosa et al. 2002

5902

Roots traits and yield

Maize

Lo964 x Lo1016

NIL

1

Landi et al., 2010

10575

Seedling root traits in PEG solution

Maize

Ac7643 x Ac7729/TZSRW

RIL

13

Ruta et al. 2010

10255

Seedling survival

Maize

BC inbred lines of 11 crosses

BC2F2

7

Hao et al. 2009

10037

Various root traits

Maize

3 populations

RIL

15

Burton et al., 2014

13639

Various shoot & root traits

Maize

Tropical population

RIL

30

Messmer et al., 2011

11138

Various plant traits in Mannitol solution and soil in pots

Medicago truncatula

Jemalong A17 x F83005.5

RIL

21

Badri et al., 2011

11209

Transpiration, water use leaf traits

Pear millet

H77/833-2 x PRLT2/89-33

RIL

varied

Kholová et al., 2012

12238

Photosynthetic pigment oxidation under stress

Pearl millet

PRLT2/89-33 x H77/833-2

Correlation with antioxidants

Kholová et al., 2011

10748

Water-use constitutive traits

Pearl millet

 

F7 lines

4

Aparna et al., 2015

14141

Cellular membrane stability (CMS) under drought

Rice

CT9993 X IR62266

DHL

9

Tripathy et al. 2000

4793

Deep roots

Rice

3 populations

RIL; lines

6

Lou et al., 2015

14119

Fertility & Yield under stress at reproduction – genetic background effects

Rice

Lemont × Teqing reciprocals

Introgression lines

many

Wang et al., 2014

13096

Growth and development under PEG stress in Hydroponics

Rice

Zhenshan 97 x  Minghui 63

RIL

14

Cui et al., 2008

9158

Growth and development under PEG stress in Hydroponics

Rice

Akihikari × IRAT109

BIL

1

Kato et al. 2008

9237

Leaf epicuticular wax and other trait responses under drought

Rice

CT9993-5-10-1-M x IR62266-42-6-2

DHL

19

Srinivasan et al., 2008

9593

Leaf water relations and rolling

Rice

Bala x Azucena

RIL

13

Khowaja & Price, 2008

9242

Root depth/length

Rice

IR64 x Kinandang Patong

RIL

1 major

Uga et al., 2011

11056

Root growth traits

Rice

Azucena X Bala

RIL

<24

Price et al. 2002

6078

Root length

Rice

Kalinga III x Azucena

NILS

1

Steele et al. 2006

8097

Root length, number, thickness, penetration index

Rice

IR58821 X IR52561

RIL

28

Ali et al. 2000

4998

Root morphology and root distribution

Rice

IR64 X Azucena

DHL

39

Yadav et al. 1997

3482

Root morphology, root cell length

Rice

Azucena X Bala

F2  

24

Price and Tomos 1997

3558

Root thickness, root penetration index

Rice

CT9993 X IR62266

DHL

5

Zhang et al. 2001

5456

Root thickness, root penetration index

Rice

IR64 X Azucena

DHL

12

Zheng et al. 2000

5629

Root traits

Rice

CT9993 X IR62266

DHL

8

Kamoshita et al. 2002

5780

Root traits

Rice

IR1552 x Azucena

RIL

Zheng et al. 2003

6890

Seedling drought resistance

Rice

Indica var x Azucena

RIL

7

Zheng et al., 2008

9583

shoot biomass, deep root morphology, root thickness

Rice

IR58821/IR52561

RIL

< 12

Kamoshita et al. 2002

5998

Tiller and root  number, thickness, dry weight

Rice

CO39 X Moroberekan

RIL

18

Champoux et al. 1995

3070

Tiller and root number, penetration ability

Rice

CO39 X Moroberekan

RIL

39

Ray et al. 1996

5623

Tiller, total and penetrated root number, ratio  

Rice

Azucena X Bala

RIL

18

Price et al. 2000

4599

Various morpho-physiological traits and yield under drought

Rice

(Teking background)

Introgression lines

40

Zhao et al. 2008

9372

Yield and root traits under limited water

Rice

IR64/Azucena

DHL

Venuprasad et al. 2002

6264

Nodal root angle

Sorghum

 

RIL

4

Mace et al., 2012

11505

Transpiration ratio

Sorghum

 

RIL

3

Kapanigowda et al., 2014

13471

Leaf pubescence and water status

Soybean

'kefeng1' x 'nannong1138-2'

RIL

20

Du et al., 2009

9895

Slow wilting trait

Soybean

PI 416937 x Benning

RIL

7

Abdel-Haleem et al., 2012

11972

Photosystem activity (chlorophyll fluorescence parameters)

Sunflower

PAC2 x RHA266

RIL

5+

Kiani et al., 2008

9524

Various leaf stomatal traits

Tomato

S.pennelli into S.lycopersicum

introgression  lines

64

Fanourakis et al. 2015

13833

ABA accumulation under drought stress

Wheat

Yecora Rojo x Pavon 76

F4

7

Barakat et al., 2015

13987

Canopy temperature and yield

Wheat

Halberd x Karl92

RIL

2

Esten Mason et al., 2013

12750

Drought resistance by several physiological traits

Wheat

C306 × HUW206

RIL

Several by traits

Kumar et al., 2012

11781

Growth transpiration and yield under stress

Wheat

Drysdale x Gladius

RIL

20

Paent et al., 2015

14185

Root penetration

Wheat

Halberd x Cranbrook

DHL

53

Acuna et al. 2014

13348

Root length and dry matter

Wheat

W7984 (Synthetic) x Opata 85

RIL

8

Ayalew et al., 2017

15289

Seedling seminal root number and root angle

Wheat

SeriM82 x Hartog

RIL

6 & 6

Christopher et al., 2013

12546

Stomatal conductance and photosynthesis

Wheat

Hanxuan10 x Lumai 14

DHL

18

Wang et al., 2015

13996

Water soluble carbohydrates (stem reserve storage)

Wheat

3 populations

7-16

Rebetzke et al., 2008

9438

Osmotic adjustment (OA)                                                  Back to Top

Trait                     

Species        

 Population        

Type * 

QTL#       

Reference     

I.D. **

Osmotic adjustment under drought

Barley

Tadmor X Er/Amp

RIL

12

Teulat et al. 1998

3729

Osmotic adjustment and dehydration tolerance

Rice

CO39 X Moroberekan

RIL

1

Lilly et al. 1996

3346

Osmotic adjustment under drought

Rice

CT9993 X IR62266

DHL

5

Zhang et al. 2001

5456

Osmoregulation under drought

Sunflower

‘PAC2’ X ‘RHA266’

RIL

1 major + 4

Kiani et al., 2007

8737

Osmoregulation under drought

Wheat

Songlen X Cobdor*4/3Ag14

RIL

1  

Morgan and Tan 1996

3395

Whole plant and crop drought resistance                 Back to Top

Trait                     

Species        

 Population        

Type * 

QTL#       

Reference     

I.D. **

Biomass under drought stress in two field

Alfalfa

M. sativa subsp. sativa x M. sativa subsp. falcata

BC1

10 or 15

Ray et al., 2015

14152

Rainfed field performance in several locations

Barley

Barke x HOR11508 (H.Spontaneum)

DHL

80

Talamè et al., 2004

7208

Relative water content

Barley

RIL

9

Teulat et al., 2003

6891

Seedling desiccation tolerance

Barley

Mona x H. spontaneum

F4

7

Zhang et al. 2005

7594

Yield & components under drought stress over locations

Bean

SEA5 x CAL96

RIL

14

Mukeshimana et al., 2014

13221

Yield under drought & other stresses (“multiple stresses”) over 3 years (phenology related)

Bean

Buster’ pinto x ‘Roza’ pink

RIL

2 major

Trapp et al., 2015

14016

Yield traits over environments

Chickpea

ILC588 × ILC3279

RIL

93

Hamwieh et al. 2013

12395

Yield and components under terminal stress

Chickpeas

ILC 588 x ILC 3279

RIL

15 genomic regions

Rehman et al., 2011

10872

Seedling drought induced senescence

Cowpea

IT93K503-1 x CB46

RIL

10

Muchero et al., 2009

9824

Various physiological traits

Grass

Agrostis capillaris L. × Agrostis stolonifera L.

BC population

32

Merewitz et al., 2012

11842

Various productivity & physiological traits

Groundnut

TAG 24 × ICGV 86031

RIL

105

Ravi et al., 2011

10925

Yield traits over two locations

Groundnut

TAG 24 × ICGV 86031

RIL

Many

Faye et al., 2015

14328

Adaptive and constitutive traits

Maize

12 populatios x 22 locations

Many

Hao et al., 2010

10430

Flowering parameters under drought, ASI

Maize

Ac7643S5 X Ac7729/TZSRWS5

F2  

7

Ribaut et al. 1996

3306

Grain yield and ASI over locations

Maize

3 populations

83 & 62

Almeida et al., 2013

12328

Grain yield and components

Maize

350 crosses

 

Many

Xue et al., 2013

12790

Plant height, ear number, days to silking, yield

Maize

SD34 X SD35

F3

5

Agrama and Moussa 1996

3344

QTL × environment interaction

Maize

F2-F3-

Vargas et al. 2006

8265

Yield and ASI under field drought

Maize

X178 × B73

F2-F3-

2 clusters (45 & 60 QTLS)

Hao et al. 2008

9389

Yield and components under stress

Pearl millet

H77 x PRLT 2/89-33s

various

Yadav et al. 2002

5820

Yield and components under stress

Pearl millet

(ICMB 841) x (863B)

F3 test cross

Yadav et al. 2004

7217

Yield under terminal stress

Pearl millet

(ICMB 841) x (863B)

F2:F4

3

Bidinger et al., 2007

8894

Response to and recovery from PEG applied stress

Potato

C × E diploid potato mapping population

23

Anithakumari et al., 2011

11205

Traits involved with resistance and recovery

Potato

Population

many

Anithakumari et al., 2012

12239

Assessing genotyping methods for Yield under reproductive stage drought stress

Rice

2 populations with resistant N22

F3-4

Vikram et al., 2012

11976

Dehydration avoidance

Rice

Bala x Azucena

RIL

17

Price et al. 2002

5901

Dehydration avoidance and dehydration tolerance traits

Rice

Indica x Japonica

RIL

27, 36 & 38

Yue et al. 2006

8371

Dehydration avoidance and dehydration tolerance traits

Rice

Introgression lines from O. rufipogon

lines

12

Zhang et al.,2006

8467

Dehydration avoidance and dehydration tolerance traits

Rice

IR 58821 x IR 52561

RIL

18 to 38

Manickavelu et al., 2006

8573

Leaf rolling, leaf drying, RWC, growth

Rice

IR64 X Azucena

DHL

42

Courtois et al. 2000

4722

Morphological and physiological traits    

Rice

IR64 X Azucena

DHL

15

Hemamalini et al. 2000

4669

Morphological and physiological traits    

Rice

Bala x Azucena

RIL

24

Gomez et al., 2007

8550

Overlapping qtls for drought and salinity resistance

Rice

Teqing × Binam

BC-ILS

14

Wang et al. 2012

11839

Physio-morphological traits

Rice

CT9993 x IR62266

RIL

many

Subashri et al., 2009

9735

Productivity, water status, roots

Rice

Indica x Upland

RIL

39

Bing Yue et al., 2005

8036

Reproductive stage resistance

Rice

Apo x Moroberekan

BIL

Many

Sellamuthu et al., 2015

14014

Yield and its components under drought

Rice

Bala x Azucena

RIL

31

Lafitte et al., 2004

7369

Yield and its components under drought

Rice

Upland cv x Lowland cv

RIL

Several main effects

Zou et al. 2006

8096

Yield and its components under drought

Rice

Introgression Indica lines

36

Xu et al., 2005

8037

Yield and yield components

Rice

Tarom Molaei x Teqing and IR64

ILs

24

Wang et al., 2013

12274

Yield performance in stress and irrigated environments

Rice

Three populations

bulk-segregant analysis

1

Venuprasad et al., 2012

11562

Yield under drought at reproductive stage associated with OA

Rice

IR64 x Cabacu

RIL

1

Trijatmiko et al. 2014

13346

Yield under drought at reproductive stage over 2 years

Rice

Vandana X Way Rarem

RIL

1

Bernier et al., 2007

8772

Yield under reproductive stage drought stress

Rice

2 populations with resistant N22

F3-4

1 major +

Vikram et al., 2011

11975

Yield under reproductive stage stress over seasons

Rice

Swarna x WAB

BC lines

1

Saikumar et al., 2014

13257

Yield under reproductive stage stress, over environments

Rice

Two populations

Seg

2

Palanog et al., 2014

13196

Yield under stress

Rice

CT9993 x IR62266

DHL

1

Kumar et al. 2007

8947

Yield under stress over environments

Rice

R77298-5-6-18 x 2*Sabitri,

BC1 derived

1

Yadav et al., 2013

12412

Yield under stress over years and environments

Rice

Apo/2 x Swarna

RIL

1

Venuprasad et al. 2009

10199

Yield, biomass, Osmotic adjustment, roots

Rice

CT9993 x IR62266

DHL

47

Chandra Babu et al. 2003

6612

Yield, yield components, panicle sterility etc

Rice

CT9993 x IR62266

RIL

77

Jonaliza et al. 2004

7176

Seed and oil yield

Safflower

100 lines

collection

4

Ebrahili et al., 2017

15184

1000 kernel weight under stress and non-stress conditions

Wheat

Commercial varieties cross

F2:3

4-6

Nezhad et al., 2012

11778

Delta (transpiration efficiency) in relations to yield

Wheat

3 populations

DHL

9 - 13

Rebetzke et al., 2008

9603

Multi QTL model and GxE interactions

Wheat

RIL

Multi QTL model

Matthews et al., 2008

9601

Stress resistance and potential yield

Wheat

RAC875 x Kukri

DH

2

Bennett et al., 2012

12117

Various morpho-physiological traits

Wheat

Durum x Wild emmer

RIL

many

Peleg et al., 2009

9896

Various productivity & physiological traits

Wheat

Seri M82 x Babax

RIL

Many

McIntyre et al. 2010

10253

Various productivity & physiological traits

Wheat

Seri M82 x Babax

RIL

14, 16, 10

Suzuky Pinto et al., 2010

10658

Yield and its components under drought

Wheat

Oste-Gata x Massara-1

F3-F4

20

Golabadi et al., 2011

10751

Yield and yield components

Wheat

Dharwar Dry’ x ‘Sitta

RIL

many

Alexander et al., 2012

11452

Yield components and drought/heat  responses for 81 traits

Wheat

Meta-analysis of literature

 

many

Acuña-Galindo et al., 2015

13836

Yield interaction with water supply and hot conditions

Wheat

Trident’ x ‘Molineux

DHL

1

Kuchel et al., 2007

9103

Yield over 15 diverse environments

wheat

Low association with yield under stress

Maccaferri et al., 2011

10756

Yield stability under drought stress

Wheat

Wild emmer introgression into durum

BC isolines

3

Merchuk-Ovnat et al., 2016

14589

Yield under drought stress

Wheat

WL711 x C306

RIL

 

Shukla et al., 2015

13941

Yield over 16 diverse environments

Wheat (durum)

Kofa x Svevo.

RIL

Maccaferri et al., 2011

11214

Hormonal responses under drought                        Back to Top

Trait                     

Species        

 Population        

Type * 

QTL#       

Reference     

I.D. **

Leaf ABA concentration

Maize

Os420 X IABO78

F3

16

Tuberosa et al. 1998

5625

Leaf ABA concentration, yield

Maize

Os420 X IABO78

F4

17

Sanguineti et al. 1999

4073

Leaf size and ABA accumulation

Rice

IR20 X 63-83

F2

17

Quarrie et al. 1997

3586

ABA concentration after cold stress

Triticale

Saka 3006 x Modus

DHL

4

Zur et al., 2012

12102

ABA concentration

Wheat

Chinese Spring X Ciano 67

DHL F2

1

Quarrie et al. 1994

2942

Water-use and photosynthetic activity under drought            Back to Top

Trait                      

Species        

 Population        

Type * 

QTL#       

Reference     

I.D. **

Carbon isotope discrimination (WUE)

Arabidopsis

5

Juenger et al. 2005

7767

Carbon isotope discrimination (WUE)

Barley

Three populations

RIL

12/5/1 by population

Chen et al., 2012

11826

Adventitious root formation under waterlogging

Maize

CV B64 x teosinte

F2

2

Mano et al., 2005

7697

Vacuolar invertase activity

Maize

F2 X I0

RIL

18   

Pelleschi et al. 1999

5626

Carbon isotope discrimination and photosynthesis

Rice

Two populations

several

Takai et al., 2009

9825

Leaf rolling and stomatal conductance

Rice

Azucena X Bala

F2

8

Price et al. 1997

3671

Transpiration and photosynthesis parameter

Rice

Haogelao x Shennong265

ILS

1-3/trait

Gu et al., 2012

11474

WUE, RWC, Dry, carbon isotope discrimination

S. scabra

CPI93116 X Fitzroy

F2

36

Thumma et al. 2001

5281

Yield, maturity, water use efficiency

Soybean

Minsoy X Noir 1

RIL

3

Specht et al. 2001

5397

Photosynthesis and water status traits

Sunflower

PAC2 x RHA266

RIL

19

Herve D. et al. 2001

5537

Flooding/waterlogging/submergence tolerance         Back to Top

Trait                     

Species        

 Population        

Type * 

QTL#       

Reference     

I.D. **

Root aerenchyma formation

Barley

Yerong x Franklin 

DHL

7

Zhang et al., 2016

14650

Waterlogging tolerance

Barley

Franklin × YuYaoXiangTian Erleng

DH

4

Zhou et al., 2012

11896

Waterlogging tolerance  & Root porosity

Barley

Franklin x YuYaoXiangTian Erleng

DHL

1 syntenic

Broughton et al., 2015

13803

Waterlogging/anixia tolerance

Barley

Psaknon x breeding line

DHL

5

Bertholdsson et al., 2014

13704

Waterlogging tolerance

Brassica napus

(No2127-17 × 275B F4) x (Huyou15 × 5900 F4)

DH

11

Li et al., 2014

13248

Wilting, chlorosis and leaf death (field & greenhouse)

Chrysanthemum

Collection

100

Up to 8

Su et al., 2016

14964

Flooding tolerance

Echinocloa

E. crus-galli var. praticola × E. crus-galli var. formosensis

F2

2

Fukao et al., 2004

7121

Waterlogging tolerance

Lolium perenne

NA x  × AU6

RIL

37

Pearson et al., 2011

10862

Root aerenchyma formation

Maize

B64 × teosinte

F2

4

Mano et al. 2077

8924

Waterlogging tolerance, root & shoot traits

Maize

HZ32’ x ‘K12’

F2:F3

Up to 34

Qiu et al., 2007

8881

Development of hypertrophied lenticels and leaf epinasty

Quercus robur

F1

F1

5

Parelle et al., 2007

8720

Flooding tolerance - seedlings

Rice

Khao Hlan x IR64

BC2F2

5

Angaji et al. 2010

10267

Germination under low temperature and anoxia

Rice

USSR5 (japonica) x N22 (indica)

F2

11 & 2

Jiang et al. 2006

8288

Germination under water

Rice

IR42 x Ma-Zhan Red

F2:3

6

Septiningsih et al., 2013

12458

Leaf and internode elongation under submergence

Rice

IR74 X Jalamagna

RIL

25

Sripongpangkul et al. 2000

5042

Submergence tolerance

Rice

IR74 X FR13A

RIL

4

Nandi et al. 1997

5624

Submergence tolerance

Rice

DX18-121 X M-202

F2

1

Xu et al. 2000a

5628

Submergence tolerance                               

Rice

IR49830 x CR6241; FR13A x CT6241; Jao-Hom-Nin x KDML105

DHL;RIL;F2

Toojinda et al. 2003

6311

Submergence tolerance                               

Rice

Nipponbare/Kasalath//Nipponbare

BC lines

32

Manangkil et al., 2013

12578

Submergence tolerance (prolonged?)

Rice

IR72 x Madabaru

F2:3

4

Septiningsih et al., 2012

11630

Submergence tolerance beyond SUB1                      

Rice

IR42 x FR13A

RIL

5

Gonzaga et al., 2016

14708

Submergence tolerance

Rice (Jasmine)

KDML105 x FR13A;IR67819-;IR49830

BC lines

1

Siangliw et al., 2003

6312

Sat_064 marker – no effect

Soybean

A5403 x Archer; 9641 x Archer

RIL; NIL

-

Reyna et al. 2003

6784

Root development and morphology under hypoxia

Soybean

Tachinagaha, x Iyodaizu

RIL

11 + 7

Nguyen et al., 2017

15090

Flooding survival    

Wheat

Forno x Oberkulmer

RIL

5

St. Burgos et al. 2001

5668

Salinity tolerance                                                        Back to Top

Trait                     

Species        

 Population        

Type * 

QTL#       

Reference     

I.D. **

Growth and germination

Arabidopsis

Columbia-4 x Landsberg erecta

RIL

Up to 11

Quesada et al. 2002

6233

Ion homeostasis

Barley

Steptoe × Morex barley

DHL

2 +

Nguyen et al., 2012

12241

Salinity tolerance score

Barley

200 worldwide collections

GWAS

24

Fan et al., 2016

14694

Salt tolerance

Barley

192 genotypes

 

2

Viet Long et al., 2013

12729

Salt tolerance related stomatal traits

Barley

CM72 x Gairdner

DHL

several

Liu et al., 2014

13663

Seedling salt tolerance

Barley

Arigashar x Igri

RIL

17

Ahmadi-Ochtapeh et al., 2015

13986

Ten different traits

Barley

CM72 x Gairdner

DHL

30

Xue et al. 2009

10009

Salt tolerance and yield

Chickpeas

ICCV 2 × JG 62

RIL

varied

Vadez et al., 2012

12234

Growth under stress

Clover

Haifa2 x LCL2

F1 derived

many

Wang et al. 2010

10254

Seedling salt tolerance x 3 environments

Cotton

Gossypium hirsutum x G. tomentosum

F2:3

1 major + 10

Oluoch et al., 2016

14639

Salinity affected root traits

Lettuce

Salinas x wild L. serriola

RIL

3

Wei et al., 2014

13490

Discrimination between ionic and osmotic stress

Lotus

L. japonicus × L. burttii

RIL

Several

Quero et al., 2014

13095

Salinity tolerance in growth and physiology

Medicago truncatula

 

RIL

19 under stress

Foroozanfar et al., 2014

13411

Chlorate resistance

Rice

Japonica x indica

DHL

3

Teng et al., 2006

8551

Dry mass, Na+, K+ uptake, concentration and ratio

Rice  

IR4630 X IR15324

RIL

25

Koyama et al. 2001

5631

Germination under salinity stress

Rice

Japonica x indica

RIL

16

Wang et al., 2011

10878

Growth in saline water

Rice

Nipponbare x Kasalath

BIL

27

Takehisa et al., 2004

7220

Na+ K+ absorption

Rice

RIL  

2

Bonilla et al. 2002

5918

Na+, K+ uptake and concentration

Rice

Nona Bokra X Pokkali //IR4630 X IR10167

RIL

16

Flowers et al. 2000

4638

Na+, K+ uptake and concentration

Rice

Nona Bokra x Koshihikari,

F2-F3

2 major + minors

Lin et al. 2004

6981

Salinity seedling tolerance

Rice

Two introgression populations

BC

18+background effect

Qiu et al., 2015

14336

Salinity tolerance

Rice

Co39 x Moroberekan

RIL

1 major +

Ul Haq et al., 2010

10529

Salinity tolerance

Rice

Hasawi x 3 African varieties

F2-3

75 total

Bimpong et al. 2014

13456

Salinity tolerance at reproductive stage

Rice

Cheriviruppu X Pusa Basmati1

F2

16

Hossain et al., 2015

13741

Salt and drought tolerance by several traits

Rice

KDML105 x DH103

Substitution lines

DT-QTL8 segment in CSSL8-94

Nounjan et al., 2016

14679

Salt/alkaline seedling tolerance

Rice

Yiai 1 × Lishuinuo

RIL

Many

Liang et al., 2015

13708

Seedling tolerance under different salinity levels

Rice

Jiucaiqing(resistant) x  IR26

RIL

5 main +

Wang et al., 2012

11971

Alkaliine salt tolerance

Soybean

Jackson x JWS156-1

RIL

1

Tuyen et al., 2012

12240

Salinity tolerance

Soybean

FT-Abyara × C01 and Jin dou No. 6 × 0197

RIL

1 major

Hamwieh et al., 2011

10944

Salinity tolerance by visual rating

Soybean

PI 483463 x Hutcheson

RIL

1

Ha et al., 2013

12698

Salinity tolerance from wild resource

Soybean

Jackson x JWS156-1

RIL & F2

1

Tuyen et al., 2010

10521

Seedling tolerance in greenhouse and field

Soybean

Kefeng No. 1 x Nannong1138-2

RIL

3+6+1

Chen et al., 2008

9544

Survival rating in field and greenhouse

Soybean

S-100 (salt tolerant)/Tokyo

F2:5

1

Lee et al. 2004

7429

Fruit yield

Tomato

2 Solanum populations

RIL

8

Villalta et al., 2007

8817

Salinity tolerance associated with fruit yield

Tomato

2 Solanum populations

RIL

2

Villalta et al. 2008

9322

Various plant traits under salinity

Tomato

L. pennellii introgression lines

many

Frary et al., 2011

11194

Salinity tolerance of a halophyte

Vigna marina subsp. oblonga

V. luteola x V. marina subsp. oblonga.

RIL

1

Chankaew et al., 2014

13084

Salinity tolerance

Wheat

Opata85 x W7984

RIL

47

Ma et al., 2007

8552

Seedling salinity tolerance

Wheat

Chuan 35050 × Shannong 483

RIL

18

Xu et al., 2013

12609

Seedling salinity tolerance (12 traits)

Wheat

Xiaoyan 54 × Jing 411

RIL

Many+epistasis

Zu et al. 2012

11780

Sodium exclusion

Wheat

Berkut x Krichauff

DHL

5

Genc et al., 2010

10612

Yield and its components in the field

Wheat

Opata85 x W7984

RIL

36

Díaz De León et al., 2011

11206

Grain yield under salinity stress

Wheat (durum)

Belikh2 x Omrabi5

RIL

5

Dura et al., 2013

12875

Salinity tolerance (dead leaves etc’)

Wheat (durum)

110 varieties

 

12

Turki et al., 2015

13673

Sodium exclusion

Wheat (durum)

low Na+ /Tamaroi

 

1

Lindsay et al. 2004

7438

Cold tolerance                                         Back to Top

Trait                     

Species        

 Population        

Type * 

QTL#       

Reference     

I.D. **

Winter hardiness, fall growth, freezing injury

Alfalfa

Blazer XL 17 X Peruvian 13

BC

14

Brouwer et al. 2000

4968

Freezing tolerance

Arabidopsis

A.Thaliana x Landsberg erecta

7

Alonso-Blanco et al., 2005

8027

Freezing tolerance

Arabidopsis

C24 and Tenela

RIL

3

MEISSNER et al., 2013

12564

Cold tolerance; Vrn-1/Fr1

barley

Nure × Tremois

DHL

1

Francia et al. 2004